Contains: Neobacteria, Protoarchaea, Eukaryota, Crenarchaeota, Reitlingerellidae, Fusobacteria, Deltaproteobacteria, Alphaproteobacteria, Chromatibacteria, Geovibriales, Clostridea, Actinobacteria, Deinococci, Cyanobacteria, Chlorobacteria, Togobacteria, Bacteroidetes, Chlorobi, Planctobacteria, Spirochaetes, Epsilonproteobacteria.
The total group of living organisms can be divided for convenience between eukaryotes, in which the greater part of the cell's genetic material is contained within a nuclear membrane, and the prokaryotes which lack a distinct nucleus. It is generally agreed that the prokaryotes are paraphyletic with regard to the monophyletic eukaryotes.
LIFE [Algae, Monera, Monodermata, Mychota, Prokaryota, Thallophyta, Unibacteria]
|--Neomura (see below for synonymy) C-S02
| |--Methanopyrus Kurr, Huber et al. 1992VP SS15, GH01b [Methanopyraceae, Methanopyrales, Methanopyri]
| | `--*M. kandleri Kurr, Huber et al. 1992VP GH01b
| `--+--Neobacteria SS15
| `--+--+--+--Candidatus Micrarchaeum acidiphilum SS15
| | | `--Candidatus Iainarchaeum RS13 [Diapherotrites SS15]
| | | `--I. andersonii RS13
| | `--+--+--Candidatus Nanoarchaeum Huber, Hohn et al. 2002 HH02 [Nanoarchaeota RS13]
| | | | `--*N. equitans Huber, Hohn et al. 2002 HH02
| | | `--Candidatus Parvarchaeum [Parvarchaeota] SS15
| | | `--P. acidophilus RS13
| | `--+--Candidatus Aenigmarchaeum [Aenigmarchaeota] RS13
| | | `--A. subterraneum RS13
| | `--Nanohaloarchaeota RS13
| | |--Candidatus Nanosalina RS13
| | |--Candidatus Nanosalinarum RS13
| | `--Candidatus Haloredivivus RS13
| `--+--Protoarchaea SS15
| `--+--+--Eukaryota WF13
| | `--Candidatus Lokiarchaeum [Lokiarchaeota] SS15
| `--+--Candidatus Korarchaeum WF13 [Korarchaeota SS15]
| | `--K. cryptofilum WF13
| `--+--Crenarchaeota WF13
| `--+--Candidatus Caldiarchaeum [Aigarchaeota] RS13
| | `--C. subterraneum RS13
| `--Thaumarchaeota RS13
| |--Candidatus Nitrososphaera gargensis SS15
| `--+--Cenarchaeum Preston et al. 1996 RS13, C-S02 [Cenarchaeales]
| | `--C. symbiosum RS13
| `--+--Nitrosopumilus maritimus RS13
| `--Nitrosoarchaeum SS15
| |--N. koreensis SS15
| `--N. limnia WF13
`--Bacteria (see below for synonymy) C-S02
| i. s.: Albidovulum Albuquerque, Santos et al. 2003VP IJSEM03
| `--*A. inexpectatum Albuquerque, Santos et al. 2003VP IJSEM03
| Oceanobacillus Lu, Nogi & Takami 2002VP IJSEM02
| `--*O. iheyensis Lu, Nogi & Takami 2002VP IJSEM02
| Sneathia Collins, Hoyles et al. 2002VP IJSEM02
| `--*S. sanguinegens Collins, Hoyles et al. 2002VP IJSEM02
| Marinitoga MiKo03
| |--M. camini MiKo03
| `--M. piezophila MiKo03
| Geobacillus JC08
| |--G. kaustophilus (Priest et al. 1989) Nazina et al. 2001 JC08
| |--G. stearothermophilus (Donk 1920) Nazina et al. 2001 JC08
| |--G. thermodenitrificans (Manachini et al. 2000) Nazina et al. 2001 JC08
| |--G. thermoglucosidasius (Suzuki et al. 1984) Nazina et al. 2001 JC08
| `--G. thermoleovorans (Zarilla & Perry 1988) Nazina et al. 2001 JC08
| Reitlingerellidae X04
| Salome hubeiensis Zhang 1986 X04
| Polytrichoides Hermann 1974 X04
| `--P. lineatus X04
| Nannococcus vulgaris X04
| Nitrocystis oceanus PHK96
| Beneckea natriegens PHK96
| Microcyclus flavus PHK96
| Branhamella catarrhalis PHK96
| Siderocapsaceae PHK96
| |--Siderocapsa PHK96
| |--Naumanniella PHK96
| |--Siderococcus PHK96
| `--Ochrobium PHK96
| Pelonemataceae PHK96
| |--Pelonema PHK96
| |--Achroonema PHK96
| |--Peloploca PHK96
| `--Desmanthos PHK96
| Schismatispaeridium kumauni T84
| Trachysphaeridium decorum T84
| Bryantella Wolin, Miller et al. 2004VP non Britton 1957 (ICZN) IJSEM04
| `--*B. formatexigens Wolin, Miller et al. 2004VP IJSEM04
| Megasphaera BJ07
| |--M. inornata BJ07
| `--M. ornata X04
| Parapandorina raphospissa BJ07, G02
| Asaia siamensis Katsura et al. 2001 JC08
| Trichlorobacter thiogenes De Wever et al. 2001 JC08
| Anaerococcus JC08
| |--A. octavius (Murdoch et al. 1997) Ezaki et al. 2001 JC08
| `--A. prevotii (Foubert & Douglas 1948) Ezaki et al. 2001 JC08
| Carboxydibrachium pacificum JC08
| Desulfotignum balticum Kuever et al. 2001 JC08
| Dorea formicigenerans (Holdeman & Moore 1974) Taras et al. 2002 JC08
| Gallicola barnesae (Schiefer-Ullrich & Andreesen 1986) Ezaki et al. 2001 JC08
| Marinibacillus marinus (Rüger & Richter 1979) Yoon et al. 2001 JC08
| Olsenella JC08
| |--O. profusa Dewhirst et al. 2001 JC08
| `--O. uli (Olsen et al. 1991) Dewhirst et al. 2001 JC08
| Peptoniphilus JC08
| |--P. asaccharolyticus (Distaso 1912) Ezaki et al. 2001 JC08
| |--P. harei (Murdoch et al. 1997) Ezaki et al. 2001 JC08
| |--P. indolicus (Christiansen 1934) Ezaki et al. 2001 JC08
| `--P. ivorii (Murdoch et al. 1997) Ezaki et al. 2001 JC08
| Nitrosolobus multiformis PHK96
| Candidatus Saccharobacterium [Saccharobacteria] RS13
| `--S. alaburgensis RS13
| Rhodopirellula baltica SS15
| Liberobacter asiaticum BJ02
|--+--Fusobacteria MiKo03
| `--Proteobacteria [Thiobacteria] RS13
| | i. s.: Accumulibacter phosphatis ZS03
| | Epulopiscium fishelsoni C-S02, PHK96
| | Bacteriovorax stolpii IJ03
| |--Deltaproteobacteria MoKi03
| `--Rhodobacteria [Athiorhodaceae, Hydrogenophilaceae, Hydrogenophilales] C-S02
| |--Alphaproteobacteria MoKi03
| `--Chromatibacteria MoKi03
`--+--+--+--Candidatus Aminicenans [Aminicenantes] RS13
| | | `--A. sakinawicola RS13
| | `--Acidobacteria [Acidobacteriaceae, Acidobacteriales] RS13
| | |--Acidobacterium capsulatum HP98
| | `--+--Holophaga foetida HP98
| | `--Geothrix fermentans HP98
| `--+--Candidatus Methylomirabilis oxyfera RS13
| `--Nitrospirae [Nitrospiraceae, Nitrospirales] RS13
| |--+--Candidatus Magnetobacterium Spring, Amann et al. 1993 GH01c
| | | `--Candidatus *M. bavaricum Spring, Amann et al. 1993 GH01c
| | `--Thermodesulfovibrio Henry, Devereux et al. 1994VP GH01c
| | `--*T. yellowstonii Henry, Devereux et al. 1994VP GH01c
| `--+--Nitrospira Watson, Bock et al. 1986VP GH01c
| | `--*N. marina Watson, Bock et al. 1986VP GH01c
| `--Leptospirillum (ex Markosyan 1972) Hippe 2000VP GH01c
| |--*L. ferrooxidans (ex Markosyan 1972) Hippe 2000VP GH01c
| `--L. thermoferrooxidans Hippe 2000VP GH01c
`--+--Geovibriales RS13
`--+--+--Terrabacteria [Eobacteria] RS13
| | |--Clostridea RS13
| | `--+--+--Actinobacteria RS13
| | | `--+--Deinococci RS13
| | | `--Armatimonadetes RS13
| | `--+--+--Pyrenomonas salina MP95
| | | `--Cyanobacteria RS13
| | `--+--Chlorobacteria RS13
| | `--Thermodesulfobium Mori, Kim et al. 2004VP MoKi03, IJSEM04 [Thermodesulfobiaceae]
| | `--*T. narugense Mori, Kim et al. 2004VP IJSEM04
| `--+--Synergistes Allison, Mayberry et al. 1993VP GH01d [Synergistetes RS13]
| | `--S. jonesii Allison, Mayberry et al. 1993VP GH01d
| `--+--Candidatus Caldatribacterium [Atribacteria] RS13
| | `--C. californiense RS13
| `--+--+--Togobacteria RS13
| | `--Candidatus Acetothermum [Acetothermia] RS13
| | `--A. autotrophicum RS13
| `--+--Candidatus Fervidibacter [Fervidibacteria] RS13
| | `--F. sacchari RS13
| `--+--Caldiserica RS13
| `--Dictyoglomus MiKo03 [Dictyoglomaceae, Dictyoglomales, Dictyoglomi RS13]
| `--D. thermophilum MiKo03
`--+--+--Candidatus Hydrogenedens [Hydrogenedentes] RS13
| | `--H. terephthalicus RS13
| `--+--Candidatus Cloacimonas [=Cloacamonas; Cloacimonetes] RS13
| | `--C. acidaminovorans RS13
| `--+--+--Gemmatimonas Zhang, Sekiguchi et al. 2003 ZS03 (see below for synonymy)
| | | `--*G. aurantiaca Zhang, Sekiguchi et al. 2003 ZS03
| | `--Fibrobacter ZS03 (see below for synonymy)
| | |--F. intestinalis ALS95
| | `--F. succinogenes HP98
| `--+--Candidatus Latescibacter [Latescibacteria] RS13
| | `--L. anaerobius RS13
| `--+--Sphingobacteria C-S02
| | |--Bacteroidetes RS13
| | `--Chlorobi RS13
| `--+--Caldithrix Miroshnichenko, Kostrikina et al. 2003 RS13, MiKo03
| | `--*C. abyssi Miroshnichenko, Kostrikina et al. 2003 MiKo03
| `--Candidatus Marinimicrobium [Marinimicrobia] RS13
| `--M. atlanticum RS13
`--+--+--Planctobacteria RS13
| `--Candidatus Omnitrophus [Omnitrophica] RS13
| `--O. fodinae RS13
`--+--Spirochaetes RS13
`--+--+--Elusimicrobia RS13
| `--Candidatus Aerophobus [Aerophobetes] RS13
| `--A. profundus RS13
`--+--+--Epsilonproteobacteria RS13
| `--Desulfurellaceae [Desulfurellales] GH01a
| |--Desulfurella acetivorans MoKi03
| `--Hippea GH01a
`--Patescibacteria RS13
|--Candidatus Microgenomatus [Microgenomates] RS13
| `--M. auricola RS13
`--+--Candidatus Paceibacter [Parcubacteria] RS13
| `--P. normanii RS13
`--Candidatus Altimarinus [Gracilibacteria] RS13
`--A. pacificus RS13
Life incertae sedis:
Anabaenidium Schopf 1968 G79
`--*A. johnsonii Schopf 1968 G79
Animikiea Barghoorn 1965 G79
`--*A. septata Barghoorn 1965 G79
Antigus Butin 1959 G79
`--*A. cusarandicus Butin 1959 G79
Archaeogloeocapsa Reitlinger 1956 G79
`--*A. povarovkensis Reitlinger 1956 G79
Archaeonema Schopf 1968 G79
`--*A. longicellularis Schopf 1968 G79
Archaeorestis Barghoorn 1965 G79
`--*A. schreiberensis Barghoorn 1965 G79
Archaeosphaeroides Schopf & Barghoorn 1967 G79
`--*A. barbertonensis Schopf & Barghoorn 1967 G79
Archaeotrichion Schopf 1968 G79
`--*A. contortum Schopf 1968 G79
Calyptothrix Schopf 1968 G79
`--*C. annulata Schopf 1968 G79
Catinella Pflug 1966 nec Pease 1870 (ICZN) nec Stache 1877 (ICZN) G79
`--*C. polymorpha Pflug 1966 G79
Caudiculophycus Schopf 1968 G79
`--*C. rivularioides Schopf 1968 G79
Cephalophytarion Schopf 1968 G79
`--*C. grande Schopf 1968 G79
Chlamydomonopsis Edhorn 1973 G79
`--*C. primordialis Edhorn 1973 G79
Contortothrix Schopf 1968 G79
`--*C. vermiformis Schopf 1968 G79
Cumulosphaera Edhorn 1973 G79
`--*C. lamellosa Edhorn 1973 G79
Cyanonema Schopf 1968 G79
`--*C. attenuata Schopf 1968 G79
Entosphaeroides Barghoorn 1965 G79
`--*E. amplus Barghoorn 1965 G79
Eoastrion Barghoorn 1965 G79
`--*E. simplex Barghoorn 1965 G79
Eobacterium Barghoorn & Schopf 1966 G79
`--*E. isolatum Barghoorn & Schopf 1966 G79
Eoepiphyton Butin 1959 G79
`--*E. jalgamicum Butin 1959 G79
Eosphaera Barghoorn 1965 G79
`--*E. tyleri Barghoorn 1965 G79
Fibularix Pflug 1965 G79
`--*F. funicula Pflug 1965 G79
Filamentella Pflug 1965 G79
`--*F. plurima Pflug 1965 G79
Filiconstrictosus Schopf & Blacic 1971 G79
`--*F. majusculus Schopf & Blacic 1971 G79
Halythrix Schopf 1968 G79
`--*H. nodosa Schopf 1968 G79
Heliconema Schopf 1968 G79
`--*H. australiensis Schopf 1968 G79
Kakabekia Barghoorn 1965 G79
`--*K. umbellata Barghoorn 1965 G79
Millaria Pflug 1966 G79
`--*M. implexa Pflug 1966 G79
Montanella Pflug 1965 G79
`--*M. beltensis Pflug 1965 G79
Obconiphycus Schopf & Blacic 1971 G79
`--*O. amadeus Schopf & Blacic 1971 G79
Palaeoanacystis Schopf 1968 G79
`--*P. vulgaris Schopf 1968 G79
Palaeolyngbya Schopf 1968 G79
`--*P. barghoorniana Schopf 1968 G79
Palaeomicrocoleus Korde in Vologdin & Korde 1965 G79
`--*P. gruneri Korde in Vologdin & Korde 1965 G79
Palaeopleurocapsa Knoll, Barghoorn & Golubić 1975 G79
`--*P. wopfnerii Knoll, Barghoorn & Golubić 1975 G79
Palaeorivularia Korde 1965 G79
`--*P. ontarica Korde 1965 G79
Palaeoscytonema Edhorn 1973 G79
`--*P. moorhousei Edhorn 1973 G79
Palaeospiralis Edhorn 1973 G79
`--*P. canadensis Edhorn 1973 G79
Palaeospirulina Edhorn 1973 G79
`--*P. arcuata Edhorn 1973 G79
Partitiofilum Schopf & Blacic 1971 G79
`--*P. gongyloides Schopf & Blacic 1971 G79
Petraphera Nagy 1974 G79
`--*P. vivescenticula Nagy 1974 G79
Phanerosphaerops Schopf & Blacic 1971 G79
`--*P. capitaneus Schopf & Blacic 1971 G79
Polycellaria Pflug 1965 G79
`--*P. bonnerensis Pflug 1965 G79
Primorivularia Edhorn 1973 G79
`--*P. thunderbayensis Edhorn 1973 G79
Protorivularia Butin 1959 G79
`--*P. onega Butin 1959 G79
Ramsaysphaera Pflug 1979 G79
`--*R. ramses Pflug 1979 G79
Scintilla Pflug 1966 non Deshayes 1855 (ICZN) G79
`--*S. perforata Pflug 1966 G79
Tenuofilum Schopf 1968 G79
`--*T. septatum Schopf 1968 G79
Tormentella Pflug 1966 G79
`--*T. tubiformis Pflug 1966 G79
Tricellaria Pflug 1965 G79
`--*T. deylensis Pflug 1965 G79
Veteronostocale Schopf & Blacic 1971 G79
`--*V. amoenum Schopf & Blacic 1971 G79
Zosterosphaera Schopf 1968 G79
`--*Z. tripunctata Schopf 1968 G79
Agamus Vologdin 1970 G79
`--*A. shungiticus Vologdin 1970 G79
Aseptalia Vologdin in Vologdin & Strygin 1969 G79
`--*A. ukrainica Vologdin in Vologdin & Strygin 1969 G79
Asterosphaeroides Reitlinger 1959 G79
Conferta Klinger 1968 G79
`--*C. rara Klinger 1968 G79
Crenulata Bertrand-Sarfati 1972 G79
`--*C. gigantea Bertrand-Sarfati 1972 G79
Foninia Korde 1973 G79
`--*F. fasciculata Korde 1973 G79
Globoidella Milstein 1970 G79
`--*G. jusmastachica Milstein 1970 G79
Gonamophyton Vologdin & Drozdova 1964 G79
`--*G. ovale Vologdin & Drozdova 1964 G79
Gorlovella Vologdin 1970 G79
`--*G. obvoluta Vologdin 1970 G79
Ladogaella Vologdin 1967 G79
`--*L. variabilis Vologdin 1967 G79
Marenita Korde 1973 G79
`--*M. kundatica Korde 1973 G79
Medullarites Narozhnykh in Narozhnykh & Rabotnov 1965 G79
Nelcanella Vologdin & Drozdova 1964 G79
`--*N. stellata Vologdin & Drozdova 1964 G79
Protospira Vologdin in Vologdin & Strygin 1969 non Ruedemann 1916 (ICZN) G79
`--*P. strygini Vologdin in Vologdin & Strygin 1969 G79
Ptilophyton Vologdin 1967 G79
`--*P. makarovae Vologdin 1967 G79
‘Vermiculites’ Reitlinger 1959 nec Bronn 1848 nec Rouault 1850 G79
Vermiculus Bertrand-Sarfati 1972 G79
`--*V. contortus Bertrand-Sarfati 1972 G79
Vesicophyton Vologdin in Vologdin & Drozdova 1969 G79
`--*V. punctatum Vologdin in Vologdin & Drozdova 1969 G79
Nomina invalida: Nitrospira moscoviensis Ehrich, Behrens et al. 1995 GH01c
Thermodesulfovibrio islandicus Sonne-Hansen & Ahring 1999 GH01c
Bacteria [Didermata, Endobacteria, Eubacteria, Eubacteriales, Eurybacteria, Exoflagellata, Firmibacteria, Geobacteria, Glycobacteria, Gracilicutes, Lipobacteria, Mastigomonera, Myxomonera, Negibacteria, Nitrobacteraceae, Photobacteria, Photomonera, Pimelobacteria, Posibacteria, Protobacteria, Schizomycetes, Schyzomycophyta] C-S02
Fibrobacter ZS03 [Fibrobacteraceae, Fibrobacterales, Fibrobacteres RS13, Fibrobacteria]
Gemmatimonas Zhang, Sekiguchi et al. 2003 ZS03 [Gemmatimonadaceae, Gemmatimonadales, Gemmatimonadetes RS13]
Neomura [Archaea, Archaebacteria, Archaeobacteria, Euryarchaeota, Eurytherma, Eurythermea, Mendosicutes, Metabacteria, Sulfobacteria] C-S02
*Type species of generic name indicated
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