Peptococcaceae

Vegetative cells of Desulfotomaculum acetoxidans, from Spring et al. (2009).

Belongs within: Clostridium.

The Peptococcaceae are a group of obligately anaerobic bacteria found in a variety of habitats such as in association with human or animal tissue, or in soils.

Peptococcaceae
    |--Peptococcus niger GH01a, PF99
    |--Anaeroarcus GH01a
    |--Anaerosinus GH01a
    |--Anaerovibrio GH01a
    |--Carboxydothermus GH01a
    |--Dehalobacter GH01a
    |--Dendrosporobacter GH01a
    |--Desulfonispora GH01a
    |--Desulfosporosinus orientis GH01a, MK03
    |--Succinispira GH01a
    |--Syntrophobotulus GH01a
    |--Thermoterrabacterium GH01a
    |--Desulfitobacterium GH01a
    |    |--D. chlororespirans Sanford et al. 2001 JC08
    |    |--D. dehalogenans MK03
    |    `--D. metallireducens Finneran et al. 2002 JC08
    `--Desulfotomaculum GH01a
         |  i. s.: D. auripigmentum GH01c
         |         D. guttoideum PK03
         |         D. thermoacidovorans GH01b
         |--+--D. acetoxidans MK03
         |  `--+--D. putei MK03
         |     `--D. ruminis MK03
         `--+--D. geothermicum MK03
            `--D. thermobenzoicum MK03
                 |--D. t. ssp. thermobenzoicum JC08
                 `--D. t. ssp. thermosyntrophicum Plugge et al. 2002 JC08

*Type species of generic name indicated

REFERENCES

[GH01a] Garrity, G. M., & J. G. Holt. 2001a. The road map to the Manual. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 119–166. Springer.

[GH01b] Garrity, G. M., & J. G. Holt. 2001b. Phylum BIII. Thermodesulfobacteria phy. nov. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 389–393. Springer.

[GH01c] Garrity, G. M., & J. G. Holt. 2001c. Phylum BV. Chrysiogenetes phy. nov. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 421–425. Springer.

[JC08] Judicial Commission of the International Committee on Systematics of Prokaryotes. 2008. Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. International Journal of Systematic and Evolutionary Microbiology 58: 1755–1763.

[MK03] Mori, K., H. Kim, T. Kakegawa & S. Hanada. 2003. A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. Extremophiles 7: 283–290.

[PK03] Parshina, S. N., R. Kleerebezem, J. L. Sanz, G. Lettinga, A. N. Nozhevnikova, N. A. Kostrikina, A. M. Lysenko & A. J. M. Stams. 2003. Soehningia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria. International Journal of Systematic and Evolutionary Microbiology 53: 1791–1799.

[PF99] Philippe, H., & P. Forterre. 1999. The rooting of the universal tree of life is not reliable. Journal of Molecular Evolution 49: 509–523.

Lachnospiraceae

Colony of Ruminococcus gnavus, from the Institute of Food Research.

Belongs within: Clostridium.

The Lachnospiraceae are a group of anaerobic bacteria found mostly in the gut of mammals, united on molecular phylogenetic grounds.

Lachnospiraceae
    |--Acetitomaculum GH01
    |--Anaerofilum GH01
    |--Coprococcus eutactus GH01, BS02
    |--Johnsonella GH01
    |--Roseburia cecicola GH01, KZ03
    |--Sporobacterium GH01
    |--Lachnospira pectinoschiza GH01, BS02
    |--Pseudobutyrivibrio GH01
    |    |--P. ruminis KZ03
    |    `--P. xylanivorans Kopečný, Zorec et al. 2003 KZ03
    |--Butyrivibrio GH01
    |    |--B. crossotus KZ03
    |    `--+--B. fibrisolvens KZ03
    |       `--+--B. hungatei Kopečný, Zorec et al. 2003 KZ03
    |          `--‘Clostridium’ proteoclasticum KZ03
    `--Ruminococcus GH01
         |--R. gnavus BS02
         |--R. hansenii BS02
         |--R. lactaris BS02
         |--R. obeum BS02
         |--R. productus [=Peptostreptococcus productus] PK03
         `--R. torques BS02

*Type species of generic name indicated

REFERENCES

[BS02] Bonnet, R., A. Suau, J. Doré, G. R. Gibson & M. D. Collins. 2002. Differences in rDNA libraries of faecal bacteria derived from 10- and 25-cycle PCRs. International Journal of Systematic and Evolutionary Microbiology 52: 757–763.

[GH01] Garrity, G. M., & J. G. Holt. 2001. The road map to the Manual. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 119–166. Springer.

[KZ03] Kopečný, J., M. Zorec, J. Mrázek, Y. Kobayashi & R. Marinšek-Logar. 2003. Butyrivibrio hungatei sp. nov. and Pseudobutyrivibrio xylanivorans sp. nov., butyrate-producing bacteria from the rumen. International Journal of Systematic and Evolutionary Microbiology 53: 201–209.

[PK03] Parshina, S. N., R. Kleerebezem, J. L. Sanz, G. Lettinga, A. N. Nozhevnikova, N. A. Kostrikina, A. M. Lysenko & A. J. M. Stams. 2003. Soehningia saccharolytica gen. nov., sp. nov. and Clostridium amygdalinum sp. nov., two novel anaerobic, benzaldehyde-converting bacteria. International Journal of Systematic and Evolutionary Microbiology 53: 1791–1799.

Camarotoechiidae

Various views of Leiorhynchus specimen, from the Peabody Museum of Natural History.

Belongs within: Rhynchonellida.

The Camarotoechiidae are a group of medium-sized to large brachiopods known from the Silurian to the Permian (Ager et al. 1965).

Characters (from Ager et al. 1965): Medium-sized to large, round or elliptical in outline, sides and front never truncated; costae generally rounded. Brachial valve with high median septum or ridge; hinge plate entire, or divided only in its most anterior portion, or divided by small shallow open septalium; cardinal process usually absent.

<==Camarotoechiidae AG65
    |--Septalariinae [Pseudopugnaxinae, Septalariidae] AG65
    |    |--Septalaria Leidhold 1928 AG65
    |    |    `--S. subtetragona (Schnur 1851) (see below for synonymy) AG65
    |    |--Amissopecten Havlíček 1960 AG65
    |    |    `--*A. velox (Barrande 1847) [=Terebratula velox] AG65
    |    |--Pseudocamarophoria Wedekind 1925 AG65
    |    |    `--*P. microrhyncha (Roemer 1844) [=Terebratula microrhyncha] AG65
    |    `--Pseudopugnax Likharev 1956 AG65
    |         `--*P. planissimus Likharev 1956 AG65
    `--Camarotoechiinae [Leiorhynchinae, Nudirostrinae] MM02
         |--Astutorhyncha Havlíček 1961 AG65
         |    `--*A. proserpina (Barrande 1847) [=Rhynchonella proserpina] AG65
         |--Calvinaria Stainbrook 1945 AG65
         |    `--*C. ambigua (Calvin 1878) [=Rhynchonella ambigua] AG65
         |--Felinotoechia Havlíček 1961 AG65
         |    `--*F. felina (Barrande 1879) [=Atrypa astuta var. felina] AG65
         |--Fenestrirostra Cooper 1955 AG65
         |    `--*F. glacialis (Billings 1862) [=Rhynchonella glacialis] AG65
         |--Hyborhynchella Cooper 1955 AG65
         |    `--*H. bransoni Cooper 1955 AG65
         |--Paranorella Cloud 1944 AG65
         |    `--*P. imperialis Cloud 1944 AG65
         |--Sanjuania Amos 1958 AG65
         |    `--*S. dorsisulcata Amos 1958 AG65
         |--Rhynchotretina Khalfin 1939 AG65
         |    `--*R. aequivalvis Khalfin 1939 AG65
         |--Rugaltarostrum Sartenaer 1961 AG65
         |    `--*R. madisonense (Haynes 1916) [=Leiorhynchus madisonense] AG65
         |--Camarotoechia Hall & Clarke 1893 AG65
         |    |--*C. congregata (Conrad 1841) [=Atrypa congregata] AG65
         |    `--C. allegania N79
         |--Caryorhynchus Crickmay 1952 AG65
         |    |--*C. carya (Crickmay 1952) [=Leiorhynchus carya] N79
         |    `--C. globiliforme N79
         |--Leiorhynchoidea Cloud 1944 AG65
         |    |--*L. schucherti Cloud 1944 AG65
         |    `--L. carboniferum (Girty 1911) [=Leiorhynchus carboniferum] AG65
         |--Paurorhyncha Cooper 1942 AG65
         |    |--*P. endlichi (Meek 1875) [=Rhynchonella endlichi] AG65
         |    `--P. cooperi AG65
         |--Plagiorhyncha McLearn 1918 MM02
         |    |--P. depressa (Sowerby 1839) (see below for synonymy) MM02
         |    |--P. niobe (Barrande 1847) MM02
         |    `--P. thisbe (Barrande 1847) MM02
         |--Hircinisca Havlíček 1960 AG65
         |    |--*H. sapho (Barrande 1879) [=Atrypa hircina var. sapho] AG65
         |    |--H. hebes AG65
         |    `--H. hircina AG65
         `--Leiorhynchus Hall 1860 (see below for synonymy) AG65
              |--*L. quadracostatus (Vanuxem 1842) [=Orthis quadracostata, *Nudirostra quadracostata] AG65
              |--L. castanea N79
              |--L. hippocastanea N79
              |--L. mesacostale N79
              |--L. miram N79
              |    |--L. m. miram N79
              |    `--L. m. alpha N79
              |--L. sinuatum N79
              `--L. (Zigania) ursus H79

Leiorhynchus Hall 1860 [=Liorhynchus Oehlert 1887 non Rudolphi 1801, Nudirostra Cooper & Muir-Wood 1951] AG65

Plagiorhyncha depressa (Sowerby 1839) [=Atrypa depressa; incl. A. analoga Wenjukow 1899, Plagiorhyncha analoga, Spirigerina cordata Lindström 1861, P. cordata, Rhynchonella glassii Davidson 1883, *P. glassii, Septatrypa subanaloga Rybnikova 1967, P. subanaloga] MM02

Septalaria subtetragona (Schnur 1851) [=Terebratula subtetragona; incl. T. ascendens Steininger 1853, *Septalaria ascendens] AG65

*Type species of generic name indicated

REFERENCES

[AG65] Ager, D. V., R. E. Grant, D. J. McLaren & H. Schmidt. 1965. Rhynchonellida. In: Moore, R. C. (ed.) Treatise on Invertebrate Paleontology pt H. Brachiopoda vol. 2 pp. H552–H632. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas Press: Lawrence (Kansas).

[H79] House, M. R. 1979. Devonian in the Eastern Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A183–A217. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

[MM02] Musteikis, P., & T. L. Modzalevskaya. 2002. Some Silurian brachiopods from Lithuania and their palaeobiogeographical significance. Palaeontology 45 (3): 595–626.

[N79] Norris, A. W. 1979. Devonian in the Western Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A218–A253. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

Delthyrididae

Howellella elegans, from Primitive Worlds.

Belongs within: Spiriferida.

The Delthyrididae are a group of spiriferid brachiopods known from the Lower Silurian to the Middle Devonian (Boucot et al. 1965).

Characters (from Boucot et al. 1965): Biconvex, weakly to strongly transverse; lateral slopes plicate or costate; fold and sulcus smooth or with median rib in sulcus and median groove on fold; micro-ornament typically consisting of distinct growth lamellae upon which are superposed capillae that become fimbriate at anterior margin of each growth lamella, more rarely consisting of capillae only or of teardrop-shaped granules; interior of pedicle valve generally with well-developed dental plates, some with distinct median septum but none with delthyrial plate; brachial-valve interior with area of diductor attachment deeply striate longitudinally, resulting in comblike cardinal process; crural plates absent or short; shell substance impunctate.

<==Delthyrididae [Delthyridae] M03
    |  i. s.: Eohowellella Lopushinskaya 1976 M03
    |           |--E. minimus Lopushinskaya 1976 M03
    |           `--E. yadrenkinae Lopushinskaya 1976 M03
    |--Cyrtinopsis Scupin 1896 [Cyrtinopsidae, Cyrtinopsinae] BJ65
    |    `--*C. undosa (Schnur 1853) [=Spirifer undosus] BJ65
    |         |--C. u. undosa TC71
    |         `--C. u. maiderensis TC71
    |--Kozlowskiellininae [Kozlowskiellinae] BJ65
    |    |--Hedeina Boucot 1957 BJ65
    |    |    `--*H. crispa (Linnaeus 1758) [=Anomia crispa, Delthyris crispa] BJ65
    |    `--Kozlowskiellina Boucot 1958 (see below for synonymy) BJ65
    |         |--*K. strawi (Boucot 1957) [=*Kozlowskiella strawi] BJ65
    |         |--‘Spirifer’ perlamellosus Hall 1857 [=*Megakozlowskiella perlamellosa] BJ65
    |         `--K. raricosta BJ65
    |--Delthyridinae BJ65
    |    |--Howittia Talent 1956 BJ65
    |    |    `--*H. howitti (Chapman 1905) [=Spirifer howitti] BJ65
    |    |--Ivanothyris Havlíček 1957 BJ65
    |    |    `--*I. gibbosa (Barrande 1879) [=Spirifer gibbosus] BJ65
    |    |--Neodelthyris Hou 1963 BJ65
    |    |    `--*N. sinensis Hou 1963 BJ65
    |    |--Uralospirifer Havlíček 1959 BJ65
    |    |    `--*U. mansy (Khodalevich 1951) [=Spirifer (Delthyris) mansy] BJ65
    |    `--Delthyris Dalman 1828 [incl. Quadrifarius Fuchs 1929] BJ65
    |         |--*D. elevata Dalman 1828 BJ65
    |         |--D. dumontianus H79
    |         `--D. loculata Fuchs 1923 [=*Quadrifarius loculatus] BJ65
    `--Acrospiriferinae BJ65
         |--Antispirifer Williams 1916 BJ65
         |    `--*A. harroldi Williams 1916 BJ65
         |--Australospirifer Caster 1939 BJ65
         |    `--*A. kayserianus (Clarke 1913) [=Spirifer kayserianus] BJ65
         |--Eospiriferina Grabau 1931 BJ65
         |    `--*E. lachrymosa (Grabau 1931) [=Spiriferina (*Eospiriferina) lachrymosa] BJ65
         |--Mauispirifer Allan 1947 BJ65
         |    `--*M. hectori Allan 1947 BJ65
         |--Pinguispirifer Havlíček 1957 BJ65
         |    `--*P. infirmus (Barrande 1879) [=Spirifer infirmus] BJ65
         |--Spinella Talent 1956 BJ65
         |    |--*S. buchanensis Talent 1956 BJ65
         |    `--S. yassensis [=Spirifer yassensis] TC71
         |--Acrospirifer Helmbrecht & Wedekind 1923 XY86
         |    |--*A. primaevus (Steininger 1853) [=Spirifer primaeva] BJ65
         |    |--A. coxi C68
         |    |--A. hercyniae H79
         |    |--A. kobehana N79
         |    |--A. lilydalensis H79
         |    |--A. macrothyris N79
         |    |--A. murchisoni N79
         |    |--A. peltica H79
         |    `--A. tonkinensis (Mansuy 1908) WL04
         `--Howellella Kozlowski 1843 BJ65, XY86 [=Crispella Kozlowski 1929 non Gray 1870 BJ65]
              |--*H. elegans (Muir-Wood 1925) (see below for synonymy) BJ65
              |--H. angustiplicata (Kozlowski 1829) [=Spirifer (Crispella) angustiplicatus] XY86
              |--H. cycloptera XY86
              |--H. fecunda Chen 1983 XY86
              |--H. minora XY86
              |--H. pauciplicata Waite 1956 M03
              |--H. prima Alekseeva 1967 M03
              |--H. subbragensis (Kulkov 1963) XY86
              |--H. vanuxemi N79
              `--H. yukiangensis XY86

*Howellella elegans (Muir-Wood 1925) [=Delthyris elegans; incl. Terebratula crispus Hisinger 1826, D. crispa non Anomia crispa Linné 1758] BJ65

Kozlowskiellina Boucot 1958 [=Kozlowskiella Boucot 1957 non Přibyl 1953; incl. Megakozlowskiella Boucot 1957, Megakozlowskiellina Amsden & Ventress 1963] BJ65

*Type species of generic name indicated

REFERENCES

[BJ65] Boucot, A. J., J. G. Johnson, C. W. Pitrat & R. D. Staton. 1965. Spiriferida. In: Moore, R. C. (ed.) Treatise on Invertebrate Paleontology pt H. Brachiopoda vol. 2 pp. H632–H728. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas Press: Lawrence (Kansas).

[C68] Cooper, R. A. 1968. Lower and Middle Paleozoic fossil localities of north-west Nelson. Transactions of the Royal Society of New Zealand, Geology 6 (7): 75–89.

[H79] House, M. R. 1979. Devonian in the Eastern Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A183–A217. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

[M03] Modzalevskaya, T. L. 2003. Silurian and Devonian brachiopods from Severnaya Zemlya (Russian Arctic). Geodiversitas 25 (1): 73–107.

[N79] Norris, A. W. 1979. Devonian in the Western Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A218–A253. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

[TC71] Thomson, K. S., & K. S. W. Campbell. 1971. The structure and relationships of the primitive Devonian lungfish—Dipnorhynchus sussmilchi (Etheridge). Yale University Peabody Museum of Natural History Bulletin 38: 1–109.

[WL04] Wang S.-Q. & R. F. Lundin. 2004. Sinoleperditiini (Ostracoda) from the Lower Emsian Shanglun Formation at the Shanglun village, central Guangxi, China. Journal of Paleontology 78 (2): 349–358.

[XY86] Xu H.-K. & Yao Z.-G. 1986. The Lower Devonian and its brachiopods from Lingshan, Guangxi. Acta Palaeontologica Sinica 25 (2): 169–179.

Cyrtospiriferoidea

Partial brachial valve of Cyrtiopsis animasensis, from here.

Belongs within: Spiriferida.
Contains: Cyrtospirifer.

The Cyrtospiriferoidea are a group of Devonian spiriferids characterised by the presence of a delthyrial plate.

<==Cyrtospiriferoidea RG04
    |--Spinocyrtiidae [Guerichellinae, Spinocyrtiinae] RG04
    |    |--Acutatheca Stainbrook 1945 BJ65
    |    |    `--*A. propria Stainbrook 1945 BJ65
    |    |--Alatiformia Struve 1963 M65
    |    |    `--*A. alatiformis (Drevermann 1907) [=Spirifer alatiformis] M65
    |    |--Allanella Crickmay 1953 [=Allanaria Crickmay 1953] BJ65
    |    |    `--*A. allani (Warren 1944) [=Spirifer allani, *Allanaria allani] BJ65
    |    |--Chimaerothyris Paulus, Struve & Wolfart 1963 M65
    |    |    `--*C. hotzi Paulus, Struve & Wolfart 1963 M65
    |    |--Eosyringothyris Stainbrook 1943 BJ65
    |    |    `--*E. aspera (Hall 1858) [=Spirifera aspera] BJ65
    |    |--Subcuspidella Mittmeyer 1965 [incl. Tenuicostella] RG04
    |    |    |--*S. subcuspidata (Schnur 1851) [=Spirifer subcuspidatus] RG04
    |    |    `--S. incerta (Fuchs 1909) RG04
    |    |--Mediospirifer Bublichenko 1956 BJ65
    |    |    |--M. audacula (Conrad 1842) (see below for synonymy) BJ65
    |    |    `--M. mediotextus H79
    |    |--Spinocyrtia Frederiks 1916 [incl. Platyrachella Fenton & Fenton 1924] BJ65
    |    |    |--*S. granulosa (Conrad 1839) [=Delthyris granulosa] BJ65
    |    |    |--S. macbridei (Calvin 1883) [=Spirifera macbridei, *Platyrachella macbridei] BJ65
    |    |    |--S. marcyi N79
    |    |    `--‘Platyrachella’ mesastralis N79
    |    `--Adolfia Gürich 1909 (see below for synonymy) BJ65
    |         |--*A. deflexa (Roemer 1843) [=Spirifer deflexus, *Guerichella deflexa] BJ65
    |         |--‘Guerichella’ angustistellata BJ65
    |         |--A. bifida BJ65
    |         |--‘Spirifer (*Plectospirifer)’ heimi Grabau 1931 BJ65
    |         `--A. talasica H79
    `--Cyrtospiriferidae [Cyrtospiriferinae] BJ65
         |--Cyrtospirifer RG04
         |--Platyspirifer Grabau 1931 BJ65
         |    `--*P. paronai (Martelli 1902) [=Schizophoria paronai, Theodossia (*Platyspirifer) paronai] BJ65
         |--Tenticospirifer Tien 1938 BJ65
         |    `--*T. tenticulum (de Verneuil 1845) [=Spirifer tenticulum] BJ65
         |--Arctospirifer Stainbrook 1950 BJ65
         |    `--*A. constrictus Stainbrook 1950 BJ65
         |--Austrospirifer Glenister 1955 BJ65
         |    `--*A. variabilis Glenister 1955 BJ65
         |--Dmitria Sidyachenko 1961 BJ65
         |    `--*D. romanowskii (Nalivkin 1930) [=Spirifer (Cyrtospirifer) romanowskii] BJ65
         |--Prospira Maxwell 1954 BJ65
         |    `--*P. typa Maxwell 1954 BJ65
         |--Schizospirifer Grabau 1931 BJ65
         |    `--*S. latistriatus (Frech 1911) [=Spirifer aperturatus var. latistriatus] BJ65
         |--Sphenospira Cooper 1954 BJ65
         |    `--*S. alta (Hall 1866) [=Spirifera alta] BJ65
         |--Sulcatospirifer Maxwell 1954 BJ65
         |    `--*S. primus Maxwell 1954 BJ65
         |--Syringospira Kindle 1909 BJ65
         |    `--*S. prima Kindle 1909 BJ65
         |--Indospirifer Grabau 1931 BJ65
         |    `--*I. padaukpinensis (Reed 1908) [=Spirifer padaukpinensis] BJ65
         |         |--I. p. padaukpinensis BJ65
         |         `--I. p. maoerhchuanensis BJ65
         `--Cyrtiopsis Grabau 1923 (see below for synonymy) BJ65
              |--*C. davidsoni Grabau 1923 BJ65
              |--C. animasensis N79
              |--C. graciosa Grabau 1923 [=C. (*Grabauicyrtiopsis) graciosa] BJ65
              |--C. intermedia BJ65
              |--‘Uchtospirifer’ murchisonianus H79
              |--‘*Uchtospirifer’ nalivkini Lyashenko 1957 BJ65
              `--C. transversa Grabau 1931 [=C. (*Sinocyrtiopsis) transversa] BJ65

Adolfia Gürich 1909 [=Guerichella Paeckelmann 1931, Guerichia (l. c.); incl. Plectospirifer Grabau 1931] BJ65

Cyrtiopsis Grabau 1923 [incl. Alphacyrtiopsis Gatinaud 1949 (nom. vet.), Betacyrtiopsis Gatinaud 1949 (nom. vet.), Grabauicyrtiopsis Gatinaud 1949, Paracyrtiopsis Gatinaud 1949 (nom. vet.), Sinocyrtiopsis Gatinaud 1949, Uchtospirifer Lyashenko 1957] BJ65

Mediospirifer audacula (Conrad 1842) [=Delthyris audacula; incl. D. medialis Hall 1843, *Mediospirifer medialis] BJ65

*Type species of generic name indicated

REFERENCES

[BJ65] Boucot, A. J., J. G. Johnson, C. W. Pitrat & R. D. Staton. 1965. Spiriferida. In: Moore, R. C. (ed.) Treatise on Invertebrate Paleontology pt H. Brachiopoda vol. 2 pp. H632–H728. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas Press: Lawrence (Kansas).

[H79] House, M. R. 1979. Devonian in the Eastern Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A183–A217. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

[M65] Moore, R. C. (ed.) 1965. Treatise on Invertebrate Paleontology pt H. Brachiopoda vol. 2. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas Press: Lawrence (Kansas).

[N79] Norris, A. W. 1979. Devonian in the Western Hemisphere. In: Robison, R. A., & C. Teichert (eds) Treatise on Invertebrate Paleontology pt A. Introduction. Fossilisation (Taphonomy), Biogeography and Biostratigraphy pp. A218–A253. The Geological Society of America, Inc.: Boulder (Colorado), and The University of Kansas: Lawrence (Kansas).

[RG04] Racheboeuf, P. R., R. Gourvennec, M. Deynoux & D. Brice. 2004. The Devonian of the Hodh area (Islamic Republic of Mauritania): paleontology and stratigraphy. Journal of Paleontology 78 (1): 98–110.

Kitasatospora

Kitasatospora setae, copyright Prof. Takahashi.

Belongs within: Actinomycetales.

Kitasatospora is a genus of actinomycetes that form an extensively branched mycelium with aerial hyphae differentiating into long chains of spores (Groth et al. 2003).

Characters (from Groth et al. 2003): Aerobic, chemo-organotrophic; Gram-positive; forming extensively branched substrate mycelium and aerial hyphae that differentiate into long chains of spores. Typically producing whole-organism hydrolysates rich in galactose and LL- and meso-diaminopimelic acid (A₂pm); aerial spores on solid culture and submerged spores in liquid culture containing LL-A₂pm; mycelium grown under both culture conditions mainly containing meso-A₂pm.

Kitasatospora Omura et al. 1982 [=Kitasatosporia]
    |--+--K. kifunensis (Nakagaito et al.) Groth, Schütze et al. 2003 (see below for synonymy) GS03
    |  `--+--K. azatica (Nakagaito et al. 1993) Zhang et al. 1997 GS03
    |     `--K. putterlickiae Groth, Schütze et al. 2003 GS03
    `--+--K. mediocidica Labeda 1988 GS03
       `--+--K. cystarginea Kusakabe & Isono 1992 GS03
          `--+--+--K. cochleata (Nakagaito et al. 1993) Zhang et al. 1997 GS03
             |  `--K. paracochleata (Nakagaito et al. 1993) Zhang et al. 1997 GS03
             `--+--K. griseola Takahashi et al. 1985 GS03
                `--+--+--K. cheerisanensis Chung et al. 1999 GS03
                   |  `--K. phosalacinea Takahashi et al. 1985 GS03
                   `--+--*K. setae Omura et al. 1983 GS03
                      `--+--K. cineracea Tajima et al. 2001 GS03
                         `--K. niigatensis Tajima et al. 2001 GS03

Kitasatospora kifunensis (Nakagaito et al.) Groth, Schütze et al. 2003 [=Streptomyces kifunensis Nakagaito et al. 1993, K. kifunense] GS03

*Type species of generic name indicated

REFERENCES

[GS03] Groth, I., B. Schütze, T. Boettcher, C. B. Pullen, C. Rodriguez, E. Leistner & M. Goodfellow. 2003. Kitasatospora putterlickiae sp. nov., isolated from rhizosphere soil, transfer of Streptomyces kifunensis to the genus Kitasatospora as Kitasatospora kifunensis comb. nov., and emended description of Streptomyces aureofaciens Duggar 1948. International Journal of Systematic and Evolutionary Microbiology 53: 2033–2040.

Streptosporangiaceae

Electron micrograph of Streptosporangium roseum, copyright Manfred Rohde. Scale bar = 5 µm.

Belongs within: Actinomycetales.
Contains: Nonomuria.

The Streptosporangiaceae are a group of chemoorganotrophic actinomycetes that form a branched, non-fragmenting substrate mycelium.

Streptosporangiaceae GH01
    |  i. s.: Planopolyspora GH01
    |--+--‘Streptosporangium’ viridialbum ZWR98
    |  `--+--Planobispora longispora ZWR98
    |     `--+--Planomonospora parontospora ZWR98
    |        `--Streptosporangium ZWR98
    |             |--S. violaceochromogenes ZWR98
    |             `--+--+--S. fragile ZWR98
    |                |  `--+--S. nondiastaticum ZWR98
    |                |     `--S. pseudovulgare ZWR98
    |                `--+--S. carneum ZWR98
    |                   `--+--+--S. amethystogenes ZWR98
    |                      |  `--S. longisporum ZWR98
    |                      `--+--S. vulgare ZWR98
    |                         `--+--S. album ZWR98
    |                            `--S. roseum ZWR98
    `--+--Nonomuria ZWR98
       `--+--+--Planotetraspora mira ZWR98
          |  `--+--‘Streptosporangium’ corrugatum ZWR98
          |     `--+--‘Streptosporangium’ claviforme ZWR98
          |        `--Herbidospora cretacea ZWR98
          `--+--Microtetraspora ZWR98
             |    |  i. s.: M. malaysiensis Nakajima, Ho & Kudo 2004^VP IJSEM04
             |    |--*M. glauca ZWR98
             |    `--+--M. fusca ZWR98
             |       `--M. niveoalba ZWR98
             `--Microbispora Nonomura & Ohara 1957 ZWR98
                  |--+--M. thermorosea ZWR98
                  |  `--+--M. chromogenes ZWR98
                  |     `--M. diastatica ZWR98
                  `--+--+--M. mesophila (Nonomura & Ohara) Zhang, Wang & Ruan 1998 (see below for synonymy) ZWR98
                     |  `--M. rosea ZWR98
                     `--+--M. amethystogenes ZWR98
                        `--+--M. parva ZWR98
                           `--+--M. aerata ZWR98
                              `--M. thermodiastatica ZWR98

Microbispora mesophila (Nonomura & Ohara) Zhang, Wang & Ruan 1998 [=Thermomonospora mesophila Nonomura & Ohara 1971] ZWR98

*Type species of generic name indicated

REFERENCES

[GH01] Garrity, G. M., & J. G. Holt. 2001. The road map to the Manual. In: Boone, D. R., R. W. Castenholz & G. M. Garrity (eds) Bergey’s Manual of Systematic Bacteriology 2^nd ed. vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria pp. 119–166. Springer.

[IJSEM04] IJSEM. 2004. Validation list no. 95: Validation of publication of new names and new combinations previously effectively published outside the IJSEM. International Journal of Systematic and Evolutionary Microbiology 54: 1–2.

[ZWR98] Zhang, Z., Y. Wang & J. Ruan. 1998. Reclassification of Thermomonospora and Microtetraspora. International Journal of Systematic Bacteriology 48: 411–422.